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slurm prefix scripts, possible bug with exit codes. added checking of _command file

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ville rantanen
2014-08-26 21:17:49 +03:00
parent 9c8616f39f
commit aa6a30ca48
2 changed files with 36 additions and 0 deletions
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20
anduril/slurm-maxfree
View File

@@ -69,6 +69,20 @@ EXECPATH=$( pwd )
# create the jobfile # create the jobfile
echo '#!/bin/bash' > "$JOBFILE" echo '#!/bin/bash' > "$JOBFILE"
chmod 755 "$JOBFILE" chmod 755 "$JOBFILE"
# Find _command file
for (( i=1; i<=$#; i++ ))
do if [[ "${!i}" == */_command ]]
then echo 'retrys=0' >> "$JOBFILE"
echo 'while :
do [ -f "'${!i}'" ] && {
break
} || {
echo Waiting for _command file
sleep 1; [ "$retrys" -gt 15 ] && break;
}
done ' >> "$JOBFILE"
fi
done
echo 'echo Node: $HOSTNAME'" >> \"$STATFILE\" " >> "$JOBFILE" echo 'echo Node: $HOSTNAME'" >> \"$STATFILE\" " >> "$JOBFILE"
echo "pwd >> \"$STATFILE\" " >> "$JOBFILE" echo "pwd >> \"$STATFILE\" " >> "$JOBFILE"
@@ -81,8 +95,14 @@ done
cat - >> "$STRMFILE" cat - >> "$STRMFILE"
echo -n ' < "'$STRMFILE'"' >> "$JOBFILE" echo -n ' < "'$STRMFILE'"' >> "$JOBFILE"
echo -e "\n" >> "$JOBFILE" echo -e "\n" >> "$JOBFILE"
echo 'EC=$?' >> "$JOBFILE"
echo "date +'Stop: %s' >> \"$STATFILE\" " >> "$JOBFILE" echo "date +'Stop: %s' >> \"$STATFILE\" " >> "$JOBFILE"
echo 'exit $EC' >> "$JOBFILE"
echo "The job file is in $JOBFILE" echo "The job file is in $JOBFILE"
# send the job # send the job
srun --nodelist=${NODELIST[$INDEX]} "$JOBFILE" srun --nodelist=${NODELIST[$INDEX]} "$JOBFILE"

16
anduril/slurm-random
View File

@@ -64,6 +64,20 @@ EXECPATH=$( pwd )
# create the jobfile # create the jobfile
echo '#!/bin/bash' > "$JOBFILE" echo '#!/bin/bash' > "$JOBFILE"
chmod 755 "$JOBFILE" chmod 755 "$JOBFILE"
# Find _command file
for (( i=1; i<=$#; i++ ))
do if [[ "${!i}" == */_command ]]
then echo 'retrys=0' >> "$JOBFILE"
echo 'while :
do [ -f "'${!i}'" ] && {
break
} || {
echo Waiting for _command file
sleep 1; [ "$retrys" -gt 15 ] && break;
}
done ' >> "$JOBFILE"
fi
done
echo 'echo Node: $HOSTNAME'" >> \"$STATFILE\" " >> "$JOBFILE" echo 'echo Node: $HOSTNAME'" >> \"$STATFILE\" " >> "$JOBFILE"
echo "pwd >> \"$STATFILE\" " >> "$JOBFILE" echo "pwd >> \"$STATFILE\" " >> "$JOBFILE"
@@ -76,7 +90,9 @@ done
cat - >> "$STRMFILE" cat - >> "$STRMFILE"
echo -n ' < "'$STRMFILE'"' >> "$JOBFILE" echo -n ' < "'$STRMFILE'"' >> "$JOBFILE"
echo -e "\n" >> "$JOBFILE" echo -e "\n" >> "$JOBFILE"
echo 'EC=$?' >> "$JOBFILE"
echo "date +'Stop: %s' >> \"$STATFILE\" " >> "$JOBFILE" echo "date +'Stop: %s' >> \"$STATFILE\" " >> "$JOBFILE"
echo 'exit $EC' >> "$JOBFILE"
echo "The job file is in $JOBFILE" echo "The job file is in $JOBFILE"
# send the job # send the job