#!/bin/bash if [ -z "$1" ] then echo provide the script to run exit 1 fi echo CPUS $ANDURIL_PREFIX_CPU if [ -z "${ANDURIL_NODELIST}" ] then NODELIST=( vm3 vm4 vm5 vm6 ) else read -a NODELIST <<< "$ANDURIL_NODELIST" fi if [ "$1" == "-h" ] then echo -ne ' This prefix selects the lowest cpu allocated node for slurm run. Use it with anduril: --exec-mode prefix --prefix '$( basename $0 )' To change the list of nodes (preferred order): export ANDURIL_NODELIST="vm3 vm4 vm5" Current nodelist: "'${NODELIST[@]}'"'"( ${#NODELIST[@]} nodes)\n" exit fi NODERUNS=( ) # find node with least allocated CPUs for e in ${NODELIST[@]} #do NODERUNS+=( $( squeue | grep $e | wc -l ) ) do NODERUNS+=( $( scontrol show node $e | grep CPUAlloc | sed 's,.*CPUAlloc=\([0-9]\+\).*,\1,' ) ) done MIN=${NODERUNS[0]} INDEX=0 for (( i=0; i<${#NODERUNS[@]}; i++ )) do (( ${NODERUNS[$i]} < MIN )) && { MIN=${NODERUNS[$i]} INDEX=$i } echo -n "${NODELIST[$i]}:${NODERUNS[$i]} " done echo sending to ${NODELIST[$INDEX]} JOBROOT="$HOME/.srun" mkdir -p "$JOBROOT" JOBNAME=job_$( date +"%y%m%d_%H%M%S" )_$( echo $@ | md5sum | cut -f1 -d" " ) JOBPATH="$JOBROOT/$JOBNAME" while [ -d "$JOBPATH" ] do echo Jobpath "$JOBPATH" exists JOBNAME=job_$( date +"%y%m%d_%H%M%S" )_$( echo $@ | md5sum | cut -f1 -d" " ) JOBPATH="$JOBROOT/$JOBNAME" done mkdir -p "$JOBPATH" JOBFILE="$JOBPATH/job" STATFILE="$JOBPATH/statistics" STRMFILE="$JOBPATH/stream" EXECPATH=$( pwd ) # create the jobfile echo '#!/bin/bash' > "$JOBFILE" chmod 755 "$JOBFILE" echo 'echo Node: $HOSTNAME'" >> \"$STATFILE\" " >> "$JOBFILE" echo "pwd >> \"$STATFILE\" " >> "$JOBFILE" echo "uptime >> \"$STATFILE\" " >> "$JOBFILE" echo "date +'Start: %s' >> \"$STATFILE\" " >> "$JOBFILE" echo -n "/usr/bin/time -o \"$STATFILE\" --append " >> "$JOBFILE" for (( i=1; i<=$#; i++ )) do echo -n "\"${!i}\" " >> "$JOBFILE" done #Catch the input stream (for R launcher) cat - >> "$STRMFILE" echo -n ' < "'$STRMFILE'"' >> "$JOBFILE" echo -e "\n" >> "$JOBFILE" echo "date +'Stop: %s' >> \"$STATFILE\" " >> "$JOBFILE" echo "The job file is in $JOBFILE" minutes_now=$( date "+%M" ) # send the job srun --nodelist=${NODELIST[$INDEX]} "$JOBFILE" # clear out old job definitions (semirandomly) if [ ! $( date "+%M" ) -eq $minutes_now ] then find "$JOBROOT" -maxdepth 2 -mindepth 2 -type f -mtime +10 -delete find "$JOBROOT" -type d -depth -empty -delete fi